
C4 Alignment:
------------
         Query: GPx6_Human
        Target: KI537663.1:subseq(1051233,200212) Balaenoptera acutorostrata scammoni unplaced genomic scaffold scaffold224, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 955
   Query range: 3 -> 220
  Target range: 108750 -> 99999

      4 : GlnPheGlnAlaSerCysLeuValLeuPhePheLeuValGlyPheAlaGlnGlnThrL :     23
          ||||||  !|||!!!|||||| !!! !.!.|||||||||||||||||||||! !|||!
          GlnPheTrpAlaCysCysLeuPheSerLeuPheLeuValGlyPheAlaGlnProThrP
 108750 : CAGTTCTGGGCCTGCTGTCTTTTCTCACTGTTCCTGGTCGGCTTCGCTCAGCCGACCC : 108693

     24 : euLysProGlnAsnArgLys  >>>> Target Intron 1 >>>>  ValAspCys :     32
           !|||! !|||.!.! !|||           1823 bp           |||||||||
          roLysGlnGlnGlnMetLys++                         ++ValAspCys
 108692 : CGAAACAGCAACAGATGAAGgt.........................agGTGGATTGC : 106843

     33 : AsnLysGlyValThrGlyThrIleTyrGluTyrGlyAlaLeuThrLeuAsnGlyGluG :     52
           !!|||||||||||||||||||||||||||||||||||||||.!!|||||||||||||
          TyrLysGlyValThrGlyThrIleTyrGluTyrGlyAlaLeuAlaLeuAsnGlyGluG
 106842 : TATAAGGGGGTGACAGGCACCATCTATGAGTATGGAGCTCTCGCCCTCAATGGCGAGG : 106783

     53 : luTyrIleGlnPheLysGlnPheAlaGlyLysHisValLeuPheValAsnValAlaAl :     71
          ||||||||||||||||||||!:!|||||||||||||||||||||||||||||||||.!
          luTyrIleGlnPheLysGlnTyrAlaGlyLysHisValLeuPheValAsnValAlaTh
 106782 : AGTATATCCAGTTCAAACAGTATGCGGGCAAGCATGTCCTCTTTGTCAATGTGGCCAC : 106726

     72 : aTyrUnkGlyLeuAlaAlaGlnTyrPro{G}  >>>> Target Intron 2 >>>> :     81
          !|||   |||||||||!.!|||||||||{|}           4530 bp         
          rTyr***GlyLeuAlaGlyGlnTyrPro{G}++                         
 106725 : CTATTGAGGCTTGGCAGGTCAGTATCCT{G}gt......................... : 106693

     82 :   {lu}LeuAsnAlaLeuGlnGluGluLeuLysAsnPheGlyValIleValLeuAlaP :     99
            {||}|||||||||||||||||||||||||||  !|||||||||:!!||||||!.!|
          ++{lu}LeuAsnAlaLeuGlnGluGluLeuLysProPheGlyValValValLeuGlyP
 106692 : ag{AA}CTGAATGCACTACAGGAGGAGCTGAAGCCTTTTGGTGTGGTTGTGTTGGGCT : 102112

    100 : heProCysAsnGlnPheGlyLysGlnGluProGlyThrAsnSerGluIleLeuLeuGl :    118
          ||||||||||||||||||||||||||||||||!.!! !||||||||||||||||||||
          heProCysAsnGlnPheGlyLysGlnGluProAlaLysAsnSerGluIleLeuLeuGl
 102111 : TTCCCTGCAACCAATTTGGAAAACAAGAACCAGCAAAAAACTCAGAGATCCTTTTGGG : 102055

    119 : yLeu{Ly}  >>>> Target Intron 3 >>>>  {s}TyrValCysProGlySer :    126
          ||||{||}            969 bp           {|}|||||| !!||||||.!!
          yLeu{Ly}++                         ++{s}TyrValArgProGlyGly
 102054 : GCTT{AA}gt.........................ag{G}TATGTACGTCCAGGTGGT : 101062

    127 : GlyPheValProSerPheGlnLeuPheGluLysGlyAspValAsnGlyGluLysGluG :    146
          ! !|||||||||!:!|||||||||||||||||||||||||||||||||||||||||||
          AspPheValProAsnPheGlnLeuPheGluLysGlyAspValAsnGlyGluLysGluG
 101061 : GACTTTGTTCCCAATTTTCAGCTCTTTGAGAAAGGGGACGTgaatggagaaaaagaac : 101002

    147 : lnLysValPheThrPheLeuLys  >>>> Target Intron 4 >>>>  AsnSer :    155
          |||||||||||!:!|||||||||            778 bp           ||||||
          lnLysValPheSerPheLeuLys++                         ++AsnSer
 101001 : agaaggtCTTTAGCTTCCTGAAGgt.........................agAACTCC : 100197

    156 : CysProProThrSerAspLeuLeuGlySerSerSerGlnLeuPheTrpGluProMetL :    175
          ||||||||||||||||||!!!|||||||||||||||||||||||||||||||||||||
          CysProProThrSerAspPheLeuGlySerSerSerGlnLeuPheTrpGluProMetL
 100196 : TGCCCTCCAACCTCTGATTTTTTGGGCTCATCAAGCCAACTCTTCTGGGAGCCCATGA : 100137

    176 : ysValHisAspIleArgTrpAsnPheGluLysPheLeuValGlyProAspGlyValPr :    194
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          ysValHisAspIleArgTrpAsnPheGluLysPheLeuValGlyProAspGlyValPr
 100136 : AGGTCCATGACATCCGCTGGAACTTTGAGAAGTTCCTGGTGGGGCCTGATGGAGTCCC : 100080

    195 : oValMetHisTrpPheHisGlnAlaProValSerThrValLysSerAspIleLeuGlu :    213
          |:!!|||!.!|||||||||!:!||| !!:!!|||||||||||||||||||||||||||
          oIleMetArgTrpPheHisArgAlaSerIleSerThrValLysSerAspIleLeuGlu
 100079 : TATCATGCGCTGGTTCCACCGGGCTTCCATCAGCACAGTCAAGTCAGACATCCTGGAG : 100023

    214 : TyrLeuLysGlnPheAsnThr :    220
          |||:!!|||||||||!!.!:!
          TyrMetLysGlnPheLysSer
 100022 : TACATGAAGCAGTTCAAAAGC : 100000

vulgar: GPx6_Human 3 220 . KI537663.1:subseq(1051233,200212) 108750 99999 - 955 M 26 78 5 0 2 I 0 1819 3 0 2 M 51 153 S 0 1 5 0 2 I 0 4526 3 0 2 S 1 2 M 38 114 S 0 2 5 0 2 I 0 965 3 0 2 S 1 1 M 33 99 5 0 2 I 0 774 3 0 2 M 67 201
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2014-11-20
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KI537663.1:subseq(1051233,200212)	exonerate:protein2genome:local	gene	100000	108750	955	-	.	gene_id 1 ; sequence GPx6_Human ; gene_orientation +
KI537663.1:subseq(1051233,200212)	exonerate:protein2genome:local	cds	108673	108750	.	-	.	
KI537663.1:subseq(1051233,200212)	exonerate:protein2genome:local	exon	108673	108750	.	-	.	insertions 0 ; deletions 0
KI537663.1:subseq(1051233,200212)	exonerate:protein2genome:local	splice5	108671	108672	.	-	.	intron_id 1 ; splice_site "GT"
KI537663.1:subseq(1051233,200212)	exonerate:protein2genome:local	intron	106850	108672	.	-	.	intron_id 1
KI537663.1:subseq(1051233,200212)	exonerate:protein2genome:local	splice3	106850	106851	.	-	.	intron_id 0 ; splice_site "AG"
KI537663.1:subseq(1051233,200212)	exonerate:protein2genome:local	cds	106696	106849	.	-	.	
KI537663.1:subseq(1051233,200212)	exonerate:protein2genome:local	exon	106696	106849	.	-	.	insertions 0 ; deletions 0
KI537663.1:subseq(1051233,200212)	exonerate:protein2genome:local	splice5	106694	106695	.	-	.	intron_id 2 ; splice_site "GT"
KI537663.1:subseq(1051233,200212)	exonerate:protein2genome:local	intron	102166	106695	.	-	.	intron_id 2
KI537663.1:subseq(1051233,200212)	exonerate:protein2genome:local	splice3	102166	102167	.	-	.	intron_id 1 ; splice_site "AG"
KI537663.1:subseq(1051233,200212)	exonerate:protein2genome:local	cds	102048	102165	.	-	.	
KI537663.1:subseq(1051233,200212)	exonerate:protein2genome:local	exon	102048	102165	.	-	.	insertions 0 ; deletions 0
KI537663.1:subseq(1051233,200212)	exonerate:protein2genome:local	splice5	102046	102047	.	-	.	intron_id 3 ; splice_site "GT"
KI537663.1:subseq(1051233,200212)	exonerate:protein2genome:local	intron	101079	102047	.	-	.	intron_id 3
KI537663.1:subseq(1051233,200212)	exonerate:protein2genome:local	splice3	101079	101080	.	-	.	intron_id 2 ; splice_site "AG"
KI537663.1:subseq(1051233,200212)	exonerate:protein2genome:local	cds	100979	101078	.	-	.	
KI537663.1:subseq(1051233,200212)	exonerate:protein2genome:local	exon	100979	101078	.	-	.	insertions 0 ; deletions 0
KI537663.1:subseq(1051233,200212)	exonerate:protein2genome:local	splice5	100977	100978	.	-	.	intron_id 4 ; splice_site "GT"
KI537663.1:subseq(1051233,200212)	exonerate:protein2genome:local	intron	100201	100978	.	-	.	intron_id 4
KI537663.1:subseq(1051233,200212)	exonerate:protein2genome:local	splice3	100201	100202	.	-	.	intron_id 3 ; splice_site "AG"
KI537663.1:subseq(1051233,200212)	exonerate:protein2genome:local	cds	100000	100200	.	-	.	
KI537663.1:subseq(1051233,200212)	exonerate:protein2genome:local	exon	100000	100200	.	-	.	insertions 0 ; deletions 0
KI537663.1:subseq(1051233,200212)	exonerate:protein2genome:local	similarity	100000	108750	955	-	.	alignment_id 1 ; Query GPx6_Human ; Align 108751 4 78 ; Align 106850 30 153 ; Align 102164 82 114 ; Align 101078 121 99 ; Align 100201 154 201
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
